The Resource Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications, by B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan, (electronic resource)

Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications, by B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan, (electronic resource)

Label
Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications
Title
Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications
Statement of responsibility
by B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan
Creator
Contributor
Author
Provider
Subject
Language
eng
Summary
This book presents an evaluation methodology to design future FPGA fabrics incorporating hard embedded blocks (HEBs) to accelerate applications. This methodology will be useful for selection of blocks to be embedded into the fabric and for evaluating the performance gain that can be achieved by such an embedding. The authors illustrate the use of their methodology by studying the impact of HEBs on two important bioinformatics applications: protein docking and genome assembly. The book also explains how the respective HEBs are designed and how hardware implementation of the application is done using these HEBs. It shows that significant speedups can be achieved over pure software implementations by using such FPGA-based accelerators. The methodology presented in this book may also be used for designing HEBs for accelerating software implementations in other domains besides bioinformatics. This book will prove useful to students, researchers, and practicing engineers alike
Member of
http://library.link/vocab/creatorName
Varma, B. Sharat Chandra
Image bit depth
0
LC call number
TK7888.4
Literary form
non fiction
http://library.link/vocab/relatedWorkOrContributorName
  • Paul, Kolin.
  • Balakrishnan, M.
  • SpringerLink
Series statement
Springer Series in Advanced Microelectronics,
Series volume
55
http://library.link/vocab/subjectName
  • Engineering
  • Bioinformatics
  • Electronics
  • Microelectronics
  • Electronic circuits
  • Engineering
  • Circuits and Systems
  • Computational Biology/Bioinformatics
  • Electronics and Microelectronics, Instrumentation
Label
Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications, by B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan, (electronic resource)
Instantiates
Publication
Antecedent source
mixed
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
not applicable
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Introduction -- Related Work -- Methodology for Implementing Accelerators -- FPGA based Acceleration of Protein Docking -- FPGA based Acceleration of De Novo Genome Assembly -- Design of Accelerators with HEBs -- System Level Design Space Exploration -- Future Directions
Dimensions
unknown
Edition
1st ed. 2016.
Extent
XV, 122 p. 54 illus., 40 illus. in color.
File format
multiple file formats
Form of item
electronic
Isbn
9789811005916
Level of compression
uncompressed
Media category
computer
Media MARC source
rdamedia
Media type code
c
Other control number
10.1007/978-981-10-0591-6
Other physical details
online resource.
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
(DE-He213)978-981-10-0591-6
Label
Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications, by B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan, (electronic resource)
Publication
Antecedent source
mixed
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
not applicable
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Introduction -- Related Work -- Methodology for Implementing Accelerators -- FPGA based Acceleration of Protein Docking -- FPGA based Acceleration of De Novo Genome Assembly -- Design of Accelerators with HEBs -- System Level Design Space Exploration -- Future Directions
Dimensions
unknown
Edition
1st ed. 2016.
Extent
XV, 122 p. 54 illus., 40 illus. in color.
File format
multiple file formats
Form of item
electronic
Isbn
9789811005916
Level of compression
uncompressed
Media category
computer
Media MARC source
rdamedia
Media type code
c
Other control number
10.1007/978-981-10-0591-6
Other physical details
online resource.
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
(DE-He213)978-981-10-0591-6

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