The Resource Bioinformatics of behavior, Part 1, edited by Elissa J. Chesler, Melissa A. Haendel, (electronic resource )

Bioinformatics of behavior, Part 1, edited by Elissa J. Chesler, Melissa A. Haendel, (electronic resource )

Label
Bioinformatics of behavior, Part 1
Title
Bioinformatics of behavior
Title number
Part 1
Statement of responsibility
edited by Elissa J. Chesler, Melissa A. Haendel
Contributor
Subject
Genre
Language
  • eng
  • eng
Summary
This issue of International Review of Neurobiology is split over 2 volumes, bringing together cutting-edge research on Bioinformatics of Behavior. The 2 volumes review current knowledge and understanding, provide a starting point for researchers and practitioners entering the field, and build a platform for further research and discovery.Leading authors review the state-of-the-art in their field of investigation, and provide their views and perspectives for future researchChapters are extensively referenced to provide readers with a comprehensive list of resources on the topics cov
Is Subseries of
Cataloging source
MiAaPQ
Dewey number
616.834
Illustrations
  • illustrations
  • charts
Index
index present
Language note
English
LC call number
BF199
LC item number
.B56 2012
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
http://library.link/vocab/relatedWorkOrContributorName
  • Chesler, Elissa J
  • Haendel, Melissa A
Series statement
International review of neurobiology,
Series volume
v. 103
http://library.link/vocab/subjectName
  • Behaviorism (Psychology)
  • Bioinformatics
Label
Bioinformatics of behavior, Part 1, edited by Elissa J. Chesler, Melissa A. Haendel, (electronic resource )
Instantiates
Publication
Note
Description based upon print version of record
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
cr
Content category
text
Content type code
txt
Contents
  • Front Cover; Bioinformatics of Behavior: Part 1; Copyright; Contents; Contributors; Preface; Chapter One: Lost and Found in Behavioral Informatics; 1. Introduction; 2. Major Themes in the Bioinformatics of Behavior; 2.1. Standardizing data; 2.2. Use of model and not-so-model organisms in the study of behavior; 2.3. Speaking the same behavioral language; 3. Further Words; References; Chapter Two: Biological Databases for Behavioral Neurobiology; 1. Introduction; 2. Neuroscience Databases; 3. Databases: Under the Hood; 3.1. A generalized solution; 3.2. The database explosion
  • 3.3. Relational databases3.4. Analytical databases; 3.5. Data warehouse; 3.6. Federated databases; 3.7. Laboratory information management systems; 3.8. Knowledge bases; 4. Beyond Relational Databases; 4.1. Wide column and key-value stores; 4.2. Document stores; 4.3. Graph databases; 5. Living with Heterogeneity; 5.1. Integrating primary data; 5.2. Managing secondary data; 6. Conclusion; References; Chapter Three: A Survey of the Neuroscience Resource Landscape: Perspectives from the Neuroscience Information Framework; 1. Introduction; 2. Materials and Methods; 2.1. Overview of NIF system
  • 2.1.1. Content2.1.2. Search; 3. Results; 3.1. Data, derived data, and metadata; 3.1.1. Types of data; 3.1.2. Data liquidity; 3.2. Resource utilization via the NIF; 3.3. The NIF resource landscape; 3.4. Discussion; Acknowledgment; References; Chapter Four: The Neurobehavior Ontology: An Ontology for Annotation and Integration of Behavior and Behavioral Phenotypes; 1. Introduction; 2. Results; 2.1. Neurobehavior ontology; 2.2. Behavioral process ontology; 2.3. Behavior phenotype ontology; 2.4. Use case: Increased drinking behavior; 3. Application of NBO; 3.1. Human behavior phenotypes
  • 3.2. Mouse behavior phenotypes3.3. Zebrafish behavior phenotypes; 3.4. Drosophila behavior phenotypes; 3.5. Rat behavior phenotypes; 4. Discussion; 4.1. Relating animal models to human behavior-related diseases; 5. Methods; 5.1. Ontology; 5.2. NBO and phenotype ontologies; 5.3. Manual curation; 5.4. Maintenance, release, and availability; Acknowledgments; References; Chapter Five: Ontologies for Human Behavior Analysis and Their Application to Clinical Data; 1. Introduction; 2. Medical Terminologies and Vocabularies for Human Functioning; 2.1. SNOMED CT; 2.2. ICD and ICF; 2.3. DSM-IV
  • 3. From Clinical Terminologies to Ontologies3.1. Domain and upper-level ontologies; 3.2. Mental functioning ontology; 3.3. Mental disease ontology; 3.4. Ontologies in the analysis of human behavior; 4. Applications to Clinical Data and Translational Research; 5. Conclusions; Acknowledgments; References; Chapter Six: Text-Mining and Neuroscience; 1. Introduction; 2. Terminologies and Data Integration; 3. NeuroNames; 4. Leveraging Neuroscience Ontologies and Vocabularies; 5. Information Retrieval; 6. Textpresso for Neuroscience; 7. IR Using the Neuroscience Information Framework
  • 8. Supervised Text Classification
Dimensions
unknown
Edition
1st ed.
Extent
1 online resource (213 p.)
Form of item
online
Isbn
9781283854030
Media category
computer
Media type code
c
Specific material designation
remote
System control number
  • (EBL)1081141
  • (OCoLC)823388504
  • (SSID)ssj0001056178
  • (PQKBManifestationID)11568977
  • (PQKBTitleCode)TC0001056178
  • (PQKBWorkID)11020155
  • (PQKB)11206544
  • (MiAaPQ)EBC1081141
  • (EXLCZ)992550000000707348
Label
Bioinformatics of behavior, Part 1, edited by Elissa J. Chesler, Melissa A. Haendel, (electronic resource )
Publication
Note
Description based upon print version of record
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
cr
Content category
text
Content type code
txt
Contents
  • Front Cover; Bioinformatics of Behavior: Part 1; Copyright; Contents; Contributors; Preface; Chapter One: Lost and Found in Behavioral Informatics; 1. Introduction; 2. Major Themes in the Bioinformatics of Behavior; 2.1. Standardizing data; 2.2. Use of model and not-so-model organisms in the study of behavior; 2.3. Speaking the same behavioral language; 3. Further Words; References; Chapter Two: Biological Databases for Behavioral Neurobiology; 1. Introduction; 2. Neuroscience Databases; 3. Databases: Under the Hood; 3.1. A generalized solution; 3.2. The database explosion
  • 3.3. Relational databases3.4. Analytical databases; 3.5. Data warehouse; 3.6. Federated databases; 3.7. Laboratory information management systems; 3.8. Knowledge bases; 4. Beyond Relational Databases; 4.1. Wide column and key-value stores; 4.2. Document stores; 4.3. Graph databases; 5. Living with Heterogeneity; 5.1. Integrating primary data; 5.2. Managing secondary data; 6. Conclusion; References; Chapter Three: A Survey of the Neuroscience Resource Landscape: Perspectives from the Neuroscience Information Framework; 1. Introduction; 2. Materials and Methods; 2.1. Overview of NIF system
  • 2.1.1. Content2.1.2. Search; 3. Results; 3.1. Data, derived data, and metadata; 3.1.1. Types of data; 3.1.2. Data liquidity; 3.2. Resource utilization via the NIF; 3.3. The NIF resource landscape; 3.4. Discussion; Acknowledgment; References; Chapter Four: The Neurobehavior Ontology: An Ontology for Annotation and Integration of Behavior and Behavioral Phenotypes; 1. Introduction; 2. Results; 2.1. Neurobehavior ontology; 2.2. Behavioral process ontology; 2.3. Behavior phenotype ontology; 2.4. Use case: Increased drinking behavior; 3. Application of NBO; 3.1. Human behavior phenotypes
  • 3.2. Mouse behavior phenotypes3.3. Zebrafish behavior phenotypes; 3.4. Drosophila behavior phenotypes; 3.5. Rat behavior phenotypes; 4. Discussion; 4.1. Relating animal models to human behavior-related diseases; 5. Methods; 5.1. Ontology; 5.2. NBO and phenotype ontologies; 5.3. Manual curation; 5.4. Maintenance, release, and availability; Acknowledgments; References; Chapter Five: Ontologies for Human Behavior Analysis and Their Application to Clinical Data; 1. Introduction; 2. Medical Terminologies and Vocabularies for Human Functioning; 2.1. SNOMED CT; 2.2. ICD and ICF; 2.3. DSM-IV
  • 3. From Clinical Terminologies to Ontologies3.1. Domain and upper-level ontologies; 3.2. Mental functioning ontology; 3.3. Mental disease ontology; 3.4. Ontologies in the analysis of human behavior; 4. Applications to Clinical Data and Translational Research; 5. Conclusions; Acknowledgments; References; Chapter Six: Text-Mining and Neuroscience; 1. Introduction; 2. Terminologies and Data Integration; 3. NeuroNames; 4. Leveraging Neuroscience Ontologies and Vocabularies; 5. Information Retrieval; 6. Textpresso for Neuroscience; 7. IR Using the Neuroscience Information Framework
  • 8. Supervised Text Classification
Dimensions
unknown
Edition
1st ed.
Extent
1 online resource (213 p.)
Form of item
online
Isbn
9781283854030
Media category
computer
Media type code
c
Specific material designation
remote
System control number
  • (EBL)1081141
  • (OCoLC)823388504
  • (SSID)ssj0001056178
  • (PQKBManifestationID)11568977
  • (PQKBTitleCode)TC0001056178
  • (PQKBWorkID)11020155
  • (PQKB)11206544
  • (MiAaPQ)EBC1081141
  • (EXLCZ)992550000000707348

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