The Resource Computational Biology : A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R, by Röbbe Wünschiers, (electronic resource)

Computational Biology : A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R, by Röbbe Wünschiers, (electronic resource)

Label
Computational Biology : A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R
Title
Computational Biology
Title remainder
A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R
Statement of responsibility
by Röbbe Wünschiers
Creator
Contributor
Author
Provider
Subject
Language
eng
Summary
This greatly expanded 2nd edition provides a practical introduction to - data processing with Linux tools and the programming languages AWK and Perl - data management with the relational database system MySQL, and - data analysis and visualization with the statistical computing environment R for students and practitioners in the life sciences. Although written for beginners, experienced researchers in areas involving bioinformatics and computational biology may benefit from numerous tips and tricks that help to process, filter and format large datasets. Learning by doing is the basic concept of this book. Worked examples illustrate how to employ data processing and analysis techniques, e.g. for - finding proteins potentially causing pathogenicity in bacteria, - supporting the significance of BLAST with homology modeling, or - detecting candidate proteins that may be redox-regulated, on the basis of their structure. All the software tools and datasets used are freely available. One section is devoted to explaining setup and maintenance of Linux as an operating system independent virtual machine. The author's experiences and knowledge gained from working and teaching in both academia and industry constitute the foundation for this practical approach
http://library.link/vocab/creatorName
Wünschiers, Röbbe
Image bit depth
0
LC call number
QH324.2-324.25
Literary form
non fiction
http://library.link/vocab/relatedWorkOrContributorName
SpringerLink
http://library.link/vocab/subjectName
  • Life sciences
  • Computer science
  • Biochemistry
  • Proteomics
  • Bioinformatics
  • Biology
  • Life Sciences
  • Computer Appl. in Life Sciences
  • Bioinformatics
  • Proteomics
  • Biochemistry, general
  • Computer Applications
  • Biophysics and Biological Physics
Label
Computational Biology : A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R, by Röbbe Wünschiers, (electronic resource)
Instantiates
Publication
Antecedent source
mixed
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
not applicable
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Part I Whetting Your Appetite -- 1 Introduction -- 2 Content of this Book -- Part II Computer & Operating Systems -- 3 Unix/Linux -- Part III Working with Linux -- 4 The First Touch -- 5 Working with Files -- 6 Remote Connections -- 7 Playing -- 8 Using the Shell -- 9 Installing BLAST+ and ClustalW -- 10 Shell Programming -- 11 Regular Expressions -- 12 Sed -- Part IV Programming -- 13 AWK -- 14 Perl -- 15 Other Programming Languages -- Part V Advanced Data Analysis -- 16 Relational Databases with MySQL -- 17 The Statistics Suite R -- Part VI Worked Examples -- 18 Genomic Analysis of the Pathogenicity Factors from E. coli Strain O157:H7 and EHEC Strain O104:H4 -- 19 Limits of BLAST & Homology Modeling -- 20 Virtual Sequencing of pUC18c -- 21 Querying for Potential Redox-Regulated Enzymes -- Part VII Additional Material -- References -- A Supplementary Information -- Solutions -- Index
Dimensions
unknown
Edition
2nd ed. 2013.
Extent
XXIX, 449 p. 80 illus., 66 illus. in color.
File format
multiple file formats
Form of item
electronic
Isbn
9783642347498
Level of compression
uncompressed
Media category
computer
Media MARC source
rdamedia
Media type code
c
Other control number
10.1007/978-3-642-34749-8
Other physical details
online resource.
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
(DE-He213)978-3-642-34749-8
Label
Computational Biology : A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R, by Röbbe Wünschiers, (electronic resource)
Publication
Antecedent source
mixed
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
not applicable
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Part I Whetting Your Appetite -- 1 Introduction -- 2 Content of this Book -- Part II Computer & Operating Systems -- 3 Unix/Linux -- Part III Working with Linux -- 4 The First Touch -- 5 Working with Files -- 6 Remote Connections -- 7 Playing -- 8 Using the Shell -- 9 Installing BLAST+ and ClustalW -- 10 Shell Programming -- 11 Regular Expressions -- 12 Sed -- Part IV Programming -- 13 AWK -- 14 Perl -- 15 Other Programming Languages -- Part V Advanced Data Analysis -- 16 Relational Databases with MySQL -- 17 The Statistics Suite R -- Part VI Worked Examples -- 18 Genomic Analysis of the Pathogenicity Factors from E. coli Strain O157:H7 and EHEC Strain O104:H4 -- 19 Limits of BLAST & Homology Modeling -- 20 Virtual Sequencing of pUC18c -- 21 Querying for Potential Redox-Regulated Enzymes -- Part VII Additional Material -- References -- A Supplementary Information -- Solutions -- Index
Dimensions
unknown
Edition
2nd ed. 2013.
Extent
XXIX, 449 p. 80 illus., 66 illus. in color.
File format
multiple file formats
Form of item
electronic
Isbn
9783642347498
Level of compression
uncompressed
Media category
computer
Media MARC source
rdamedia
Media type code
c
Other control number
10.1007/978-3-642-34749-8
Other physical details
online resource.
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
(DE-He213)978-3-642-34749-8

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