The Resource High-performance computational solutions in protein bioinformatics, Dariusz Mrozek

High-performance computational solutions in protein bioinformatics, Dariusz Mrozek

Label
High-performance computational solutions in protein bioinformatics
Title
High-performance computational solutions in protein bioinformatics
Statement of responsibility
Dariusz Mrozek
Creator
Contributor
Author
Provider
Subject
Language
eng
Summary
Recent developments in computer science enable algorithms previously perceived as too time-consuming to now be efficiently used for applications in bioinformatics and life sciences. This work focuses on proteins and their structures, protein structure similarity searching at main representation levels, and various techniques that can be used to accelerate similarity searches. Divided into four parts, the first part provides a formal model of 3D protein structures for functional genomics, comparative bioinformatics, and molecular modeling. The second part focuses on the use of multithreading for efficient approximate searching on protein secondary structures. The third and fourth parts concentrate on finding 3D protein structure similarities with the support of GPUs and cloud computing. Parts three and four both describe the acceleration of different methods. The text will be of interest to researchers and software developers working in the field of structural bioinformatics and biomedical databases
Member of
Cataloging source
GW5XE
http://library.link/vocab/creatorName
Mrozek, Dariusz
Image bit depth
0
LC call number
QH324.2
Literary form
non fiction
Nature of contents
dictionaries
http://library.link/vocab/relatedWorkOrContributorName
SpringerLink
Series statement
SpringerBriefs in Computer Science,
http://library.link/vocab/subjectName
  • Bioinformatics
  • High performance computing
  • Computer Science
  • Computational Biology/Bioinformatics
  • Protein Structure
  • Bioinformatics
  • Mathematical and Computational Biology
  • NATURE / Reference
  • SCIENCE / Life Sciences / Biology
  • SCIENCE / Life Sciences / General
  • Bioinformatics
  • High performance computing
Label
High-performance computational solutions in protein bioinformatics, Dariusz Mrozek
Instantiates
Publication
Antecedent source
mixed
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
not applicable
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Formal Model of 3D Protein Structures for Functional Genomics, Comparative Bioinformatics, and Molecular Modeling -- Multithreaded PSS-SQL for Searching Databases of Secondary Structures -- GPU and CUDA for 3D Protein Structure Similarity Searching -- Cloud Computing for 3D Protein Structure Alignment -- General Discussion and Concluding Remarks
Dimensions
unknown
Extent
1 online resource (xix, 109 pages)
File format
multiple file formats
Form of item
  • online
  • electronic
Isbn
9783319069708
Level of compression
uncompressed
Media category
computer
Media MARC source
rdamedia
Media type code
c
Other control number
10.1007/978-3-319-06971-5
Other physical details
illustrations (some color).
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
  • (OCoLC)881319143
  • (OCoLC)ocn881319143
Label
High-performance computational solutions in protein bioinformatics, Dariusz Mrozek
Publication
Antecedent source
mixed
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
not applicable
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Formal Model of 3D Protein Structures for Functional Genomics, Comparative Bioinformatics, and Molecular Modeling -- Multithreaded PSS-SQL for Searching Databases of Secondary Structures -- GPU and CUDA for 3D Protein Structure Similarity Searching -- Cloud Computing for 3D Protein Structure Alignment -- General Discussion and Concluding Remarks
Dimensions
unknown
Extent
1 online resource (xix, 109 pages)
File format
multiple file formats
Form of item
  • online
  • electronic
Isbn
9783319069708
Level of compression
uncompressed
Media category
computer
Media MARC source
rdamedia
Media type code
c
Other control number
10.1007/978-3-319-06971-5
Other physical details
illustrations (some color).
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
  • (OCoLC)881319143
  • (OCoLC)ocn881319143

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